MAVID multiple alignment server
نویسندگان
چکیده
منابع مشابه
MAVID multiple alignment server
MAVID is a multiple alignment program suitable for many large genomic regions. The MAVID web server allows biomedical researchers to quickly obtain multiple alignments for genomic sequences and to subsequently analyse the alignments for conserved regions. MAVID has been successfully used for the alignment of closely related species such as primates and also for the alignment of more distant org...
متن کاملMAVID: constrained ancestral alignment of multiple sequences.
We describe a new global multiple-alignment program capable of aligning a large number of genomic regions. Our progressive-alignment approach incorporates the following ideas: maximum-likelihood inference of ancestral sequences, automatic guide-tree construction, protein-based anchoring of ab-initio gene predictions, and constraints derived from a global homology map of the sequences. We have i...
متن کاملMAGOS: multiple alignment and modelling server
UNLABELLED MAGOS is a web server allowing automated protein modelling coupled to the creation of a hierarchical and annotated multiple alignment of complete sequences. MAGOS is designed for an interactive approach of structural information within the framework of the evolutionary relevance of mined and predicted sequence information. AVAILABILITY The web server is freely available at http://p...
متن کاملA Web Server for Multiple Sequence Alignment Using Genetic Algorithm
So far, many multiple alignment algorithms have been developed and applied to an extensive area of the genome sequences analysis. Genetic algorithm (GA) is one of such algorithms and it has been successfully applied to multiple alignment methods. As pointed out in the paper in which many multiple alignment programs have been assessed, GA is one of the most reliable approaches to align multiple ...
متن کاملCE-MC: a multiple protein structure alignment server
CE-MC server (http://cemc.sdsc.edu) provides a web-based facility for the alignment of multiple protein structures based on C-alpha coordinate distances, using combinatorial extension (CE) and Monte Carlo (MC) optimization methods. Alignments are possible for user-selected PDB (Protein Data Bank) chains as well as for user-uploaded structures or the combination of the two. The whole process of ...
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ژورنال
عنوان ژورنال: Nucleic Acids Research
سال: 2003
ISSN: 1362-4962
DOI: 10.1093/nar/gkg623